Articles

• Schuyler D. Smith, Heffner, E., Murray, S.C. Molecular analysis of genetic diversity in a Texas maize breeding program . Maydica. 2015.
• Choi, J., Rieke, E.L., Moorman, T.B., Soupir, M.L., Allen, H.K., Smith, S.D. Practical implications of erythromycin resistance gene diversity on surveillance and monitoring of resistance . FEMS microbiology ecology. 10.1093/femsec/fiy006, January, 2018.
• Schuyler D. Smith phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects . Journal of Open Source Software. 10.21105/joss.01442, June, 2019.
• Schuyler D. Smith, Colgan, P., Yang, F., Rieke, E.L., Soupir, M.L., Moorman, T.B., Allen, H.K., Howe, A. Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems . PLOS One. journal.pone.0222470, September, 2019.
• Yu, W., Lawrence, N. C., Sooksa-nguan, T., Smith, S.D., Tenesaca, C., Howe, A. C., Hall, S. J. Microbial linkages to soil biogeochemical processes in a poorly drained agricultural ecosystem . Soil Biology and Biochemistry, 108228. March, 2021.
• Schuyler D. Smith, Choi, J., Ricker, A., Yang, F., Hinsa-Leasure, S., Soupir, M.,Allen, H., Howe, A. Diversity of Antibiotic Resistance genes and Transfer Elements-Quantitative Monitoring (DARTE-QM): a method for sequencing microbiome functional profiles (In preparation). 2021.
• Schuyler D. Smith, Howe, A. Effects of microbial community-structure on the formation of harmful algal blooms in Iowa lakes (In preparation). 2021.

Posters

• Smith, S.D., Endelman, J.B. Genotyping by Sequencing for Autotetraploid Species . Presented at the 5th International Conference on Quantitative Genetics. 2016, June 12-17. Madison, Wisconsin. & the 11th Annual National Association of Plant Breeders Meeting. 2016, August 15-18. Raleigh, North Carolina.
• Smith, S.D., Howe, A Examining Antibiotic Resistance Gene (ARG) horizontal transfer and introduction through farmland soil microbiomes as a result of modern farming practices . Presented at the 3rd Annual Front Range Computational & Systems Biology Symposium: Microbiome. 2017, June 12-13. Fort Collins, Colorado.
• Smith, S.D., Villanueva, P.E., Fukami, T., Howe, A. Co-Occurrence Networks Reveal Key OTUs in Flower Nectar Microbiomes Across Dispersal Treatments . Presented at the 17th ISME. 2018, August 12-17. Leipzig, Germany & the NSF Research Traineeship (NRT) Annual Meeting. 2018, September 27-28. Arlington, Virginia.
• Smith, S.D. phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects . Presented at the 27th ISMB/18th ECCB. 2019, July 21-25. Basel, Switzerland.